PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G62110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 673aa    MW: 74749.2 Da    PI: 3.8893
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G62110.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.51.3e-071213656
      G2-like 36 mkvkgLtlehvkSHLQkYRla 56
                 m+v+g+t+++++SHLQkYR +
  AT5G62110.1  1 MNVEGITRSQIASHLQKYRKH 21
                 9******************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-7124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MNVEGITRSQ IASHLQKYRK HMRRFKVNVT KADISKKAMK SNFESSSNIN PQCSYNYLGL  60
TKENLFKSQI GDTLGQSSLL LNNNDSIHSM YDGSIYGLNE PESNLSPMRE SVGFSRGVLP  120
LNEESECAFE TSQMSQVPRR GQYGTPSDIS VDSNGNGHLG ESLGAMNWNL NNNDVRNYES  180
STSRFSSPFS SFLHNKVQPH HNLISQTDGL LSTSILDTSQ VPSFGQYGIP NDVVGMEPEF  240
GTSYMHSNYN GINTDQVGNL VGLGRERVNV NGNVSLGQNL GSMNWNFDEN NMSNHGSSTS  300
RFSSPFSSFE DQSLSHLNEE TNELVPGLEN LSLYNDHQSI NPFLGNTINS HFVENQDQGL  360
VNNENLEFAN DDQLERNEIL TTYSVEDINN LSINNVKLNS NGETLNSTAA NLEMLFPTLD  420
MNIVNQHQGQ VLSGGNLEFA NDNQLERNAI LAGYSIEDIN NLSINNHQGQ VLSGVNFEFA  480
NDNQFERNAI LAGYSIEDIN NLSINNVNDN SNEETLNSIA ANNEMNFTIL DVNTINQVNG  540
NSNEETLNSI VANSEINFTT LDVNTINQVD NNFNEETLNS IAANSEMNFT TLDVNIINEE  600
EQGAVDMMDI VITFDEEEED VAALTDIPEQ DVEILTDVPE QGVTDLTDVP LTFDQDWKDD  660
GLMNFMLDVD DMF
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1865326610.0
Genevisible247484_at0.0
Expression AtlasAT5G62110-
AtGenExpressAT5G62110-
ATTED-IIAT5G62110-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G62110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G62110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168800.0AB016880.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG10.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201017.20.0DNA-binding domain-containing protein
TrEMBLF4K5530.0F4K553_ARATH; DNA-binding domain-containing protein
STRINGAT5G62110.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744179